Publications

  1. PS Schnable, D Ware, RS.Fulton, JC Stein, F Wei, S Pasternak, C Liang, J Zhang, L Fulton, TA Graves, P Minx, AD Reily, L Courtney, SS Kruchowski, C Tomlinson, C Strong, K Delehaunty, C Fronick, B Courtney, SM Rock, E Belter, F Du, K Kim, RM Abbott, M Cotton, A Levy, P Marchetto, K Ochoa, SM Jackson, B Gillam, W Chen, L Yan, J Higginbotham, M Cardenas, J Waligorski, E Applebaum, L Phelps, J Falcone, K Kanchi, T Thane, A Scimone, N Thane, J Henke, T Wang, J Ruppert, N Shah, K Rotter, J Hodges, E Ingenthron, M Cordes, S Kohlberg, J Sgro, B Delgado, K Mead, A Chinwalla, S Leonard, K Crouse, K Collura, D Kudrna, J Currie, R He, A Angelova, S Rajasekar, T Mueller, R Lomeli, G Scara, A Ko, K Delaney, M Wissotski, G Lopez, D Campos, M Braidotti, E Ashley, W Golser, H Kim, S Lee, J Lin, Z Dujmic, W Kim, J Talag, A Zuccolo, C Fan, A Sebastian, M Kramer, L Spiegel, L Nascimento, T Zutavern, B Miller, C Ambroise, S Muller, W Spooner, A Narechania, L Ren, S Wei, S Kumari, B Faga, M Levy, L McMahan, PV Buren, MW Vaughn, K Ying, C-T Yeh, SJ Emrich, Y Jia, A Kalyanaraman, A-P Hsia, WB Barbazuk, RS Baucom, TP Brutnell, NC Carpita, C Chaparro, J-M Chia, J-M Deragon, JC Estill, Y Fu, JA Jeddeloh, Y Han, H Lee, P Li, DR Lisch, S Liu, Z Liu, DH Nagel, MC McCann, PS Miguel, AM Myers, D Nettleton, J Nguyen, BW Penning, L Ponnala, KL Schneider, DC Schwartz, A Sharma, C Soderlund, NM Springer, Q Sun, H Wang, M Waterman, R Westerman, TK Wolfgruber, L Yang, Y Yu, L Zhang, S. Zhou, Q. Zhu, J. L. Bennetzen, R. K. Dawe, J. Jiang, N. Jiang, G. G. Presting, S. Wessler, S. Aluru, R. A. Martienssen, S. W Clifton, W Richard McCombie, RA Wing and RK Wilson 2009. "The B73 maize genome: complexity, diversity and dynamics". Science. Accepted.
    abstract | pdf

  2. RS Baucom*, JC Estill*, C Chapparro, N Upshaw, A Jogi, JM Deragon, RP Westerman, PJ SanMiguel, JL Bennetzen. 2009. "Exceptional diversity, non-random distribution and rapid evolution of retroelements in the B73 Maize genome." PLOS Genetics. Accepted.

  3. JC Estill and JL Bennetzen. 2009. "The DAWGPAWS pipeline for the annotation of genes and transposable elements in plant genomes." Plant Methods. 5:8.
    software website | preprint pdf

  4. RS Baucom, JC Estill, JC Leebans-Mack, and JL Bennetzen. 2009. “Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome.” Genome Research: 19(2): 243-254.
    abstract | pub med | pdf.

  5. WM Nelson, M Luo, J Ma, M Estep, J Estill, R He, J Talag, N Cisneros, D Kudrna, HR Kim, JSS Ammiraju, K Collura, AK Bharti, J Messing, RA Wing, P SanMiguel, JL Bennetzen and C Soderlund. 2008. “Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains.” BMC Genomics: 9:621.
    abstract | pub med | pdf.

  6. KM Devos, A Costa de Oliveira, X Xu, JC Estill, MC Estep, A Jogi, M Morales, J Pinheiro, P San Miguel, and JL Bennetzen. 2008. “Structure and organization of the wheat genome – the number of genes in the hexaploid wheat genome.” In R Appels, R Eastwood, E Lagudah, P Langridge, M Mackay, L McIntyre, and P Sharp. (Eds). Proceedings 11th International Wheat Genetics Symposium. Sydney, Sydney University Press.
    abstract | pdf

  7. AH Paterson, BA Chapman, JC Kissenger, JE Bowers, FA Feltus and JC Estill. 2006. "Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon." Trends in Genetics. 22(11): 597-602.
    abstract | pdf.

  8. AH Paterson, JE Bowers, JC Estill, TC Osborn, JC Pires, R Amasino, CF Quiros, and M Farnham. 2006. "Evolutionary history of the Angiosperms and its relevance to Brassica." Acta Hort. (ISHS). 706:49-54.
    abstract | pdf.
     
  9. CM Bethel, EB Sciara, JC Estill, JE Bowers, W Hanna, AH Paterson. 2006. "A framework linkage map of bermudagrass (Cynodon dactylon x transvaalensis) based on single-dose restriction fragments." Theoretical and Applied Genetics. 112(4): 727-737.
    abstract | pdf.
     
  10. B Yüksel, JC Estill, SR Schulze, and AH Paterson. 2005. "Organization and evolution of resistance gene analogs in peanut." Molecular Genetics and Genomics. 274(3): 248-263.
    abstract | pdf.
     
  11. JE Bowers, MA Arias, R Asher, JA Avise, RT Ball, GA Brewer,  RW Buss, AH Chen, TM Edwards, JC Estill, HE Exum, VH Goff, KL Herrick, CL James Steele, S Karunakaran, GK Lafayette, C Lemke, BS Marler, SL Masters, JM McMillan, LK Nelson, GA Newsome, CC Nwakanma, RN Odeh, CA Phelps, EA Rarick, CJ Rogers, SP Ryan, KA Slaughter, CA Soderlund, H Tang, RA Wing, AH Paterson. 2005. "Comparative physical mapping links retention of microsynteny to chromosome structure and recombination in grasses." PNAS. 102(37):13206-13211.
    abstract | pdf.
     
  12. J Rong, JE Bowers, SR Schulze, VN Waghmare, CJ Rogers, GJ Pierce, Hua Zhang,  JC Estill, and Andrew H. Paterson. 2005. "Comparative genomics of Gossypium and Arabidopsis: unraveling the consequences of both ancient and recent polyploidy." Genome Research. 15(9): 1198-1210.
    abstract | pdf.
     
  13. B Yüksel, JE Bowers, JC Estill, C Lemke, and AH Paterson. 2005. "Exploratory integration of peanut genetic and physical maps and possible contributions from Arabidopsis." Theoretical and Applied Genetics. 111: 87-94.
    abstract | pdf.
     
  14. RS Baucom, JC Estill and M Cruzan. 2005. "The effect of deforestation on the genetic diversity and structure in Acer saccharum (Marsh): evidence for the loss and restructuring of genetic variation in a natural system ." Conservation Genetics. 6: 39-50. 
    abstract | pdf.
     
  15. FA Feltus, J Wan, SR Schulze, JC Estill, N Jiang and A Paterson. 2004. "An SNP resource for rice genetics and breeding based on subspecies Indica and Japonica genome alignments". Genome Research. 14: 1812-1819.
    abstract | pdf.
     
  16. AH Paterson, JE Bowers, DG Peterson, JC Estill and BA Chapman. 2003. "Structure and evolution of cereal genomes." Current Opinion in Genetics and Development. 13:644-650.
    abstract | pdf.
     
  17. JC Estill and M Cruzan. 2001. "Phytogeography of rare plant species endemic to the Southeastern United States." Castanea. 66(1-2): 3-23.
    abstract | pdf.
     

Author: James Estill
Last Updated: October 15, 2009

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